PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38970.1.p
Common NameBRADI_3g38970, LOC100826888
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 490aa    MW: 52403.1 Da    PI: 7.0142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38970.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-17203252255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Bradi3g38970.1.p 203 RSKHSATEQRRRSKINDRFQLLREILPHN----DQKRDKASFLLEVIEYIRFLQ 252
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.5E-22200269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.628201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-18201273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.10E-16203256No hitNo description
PfamPF000105.1E-15203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYTAAG KDSPLPLPQL PGSNSKPPPS PPAQGFFLRT HDFLQPLEKP  60
SSQSPPPPSH PANNKELSGG VGTFTISHAA PVVKQEPPFA LWGAAAAADP RGHQWTLPFG  120
AARSVAVASS RPQPQSERKG AGCGGFMDAG SGSSAGAGFD DEDGLAARRE VSSSLKELTV  180
RVEAKGGSCS GSAGTDQLPN TPRSKHSATE QRRRSKINDR FQLLREILPH NDQKRDKASF  240
LLEVIEYIRF LQEKVQKYEV SYPEGNQENG KIVPWANMYF RSFWKNYQNK DQIPGDVSPD  300
PSQIIKNGSS PDFPFIVKPD DNDNGVASVG PLGALDQAET DPLGRMSHKS TETSSPDNLP  360
DIVATLPQAH PTRSSPADGS AMIKELLHNP ELAIDEGTIS LSSQYSQELL STLNHALQSS  420
GIDLSQASIS VQINLGKRAT KTSDAAANAA STELVDLAAN SQTVDHQLRF GGGAQEHRRA  480
TKRRKSDNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g38970.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574682.10.0transcription factor BIM2 isoform X1
TrEMBLI1I8450.0I1I845_BRADI; Uncharacterized protein
STRINGBRADI3G38970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-44BES1-interacting Myc-like protein 2