PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g38980.1.p

Common Name

BRADI_3g38980

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 258aa MW: 26376.2 Da PI: 5.866

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g38980.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.2	2.8e-36	55	113	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lr vPvGgg+rk+ +ss Bradi3g38980.1.p 55 EGEACPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRCVPVGGGTRKRASSS 113 5679**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	55	108	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.652	57	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-30	57	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MGEHAAAEPG RRPAQQQFAG VDLRRPKGYA AAAAAPAKTP AAAPVAATAA AAAAEGEACP 60 RCESRDTKFC YYNNYNTSQP RHFCKGCRRY WTKGGTLRCV PVGGGTRKRA SSSNTSAAAA 120 TVKRQKPSKK RRVAPPEPPA AASSADDVPA PDADAAAKTT TTPPTEAASE ITTELVVPAA 180 AAAEEDSFTD LLQEQGGGDD AVALDLGFSD YASAVGKAAG LGDPYSFEWP PAFDLGACWS 240 GAGFADPDPT GVFLNLP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g38980.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096612	3e-70	FP096612.1 Phyllostachys edulis cDNA clone: bphyem122f05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014755598.2	0.0	dof zinc finger protein MNB1A, partial
Swissprot	P38564	2e-69	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	I1I847	0.0	I1I847_BRADI; Uncharacterized protein
STRING	BRADI3G38980.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-27	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Bradi3g38980.1.p

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]