PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g39927.1.p
Common NameBRADI_3g39927, LOC100846325
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 378aa    MW: 40418.3 Da    PI: 7.5382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g39927.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13312357655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Bradi3g39927.1.p 312 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 357
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16309365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.51E-14310361No hitNo description
Gene3DG3DSA:4.10.280.103.9E-15311367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10312357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MYGSPVSKDL NQPPPPPMNS SGLLRYRSAP STLLGEVCEE FLPRAASPDA GADNVFSRFL  60
ADHQIRDSKP PAPPPPVPVP AGGHFPDEAA MASQQQQQQQ QQMMFHSQQQ QQQMGGVEGL  120
YRTVSSGGMD SAAAAAAAGA SSLIRQSSSP AGFLNHLNMD NGYESMLRAG MGMGFRNGST  180
PAAVDSSGSG GSRLKGQLSF SSRQGSLMSQ ISEMGSEDLG GSSPEAAGGG RGYMPGYPMS  240
SGWEESSLMS ENMSGMKRPR DSSEPAQNGL AHQFSLPKTS SEMAAIEKFL QFQDAVPCKI  300
RAKRGCATHP RSIAERVRRT RISERIRKLQ ELVPNMDKQT NTADMLDLAV DYIKELQEQV  360
KVINESRANC TCSASKH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g39927.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574744.10.0transcription factor bHLH130
TrEMBLA0A0Q3QB410.0A0A0Q3QB41_BRADI; Uncharacterized protein
STRINGBRADI3G39927.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-51bHLH family protein