PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g40343.1.p
Common NameBRADI_3g40343
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 213aa    MW: 23318.4 Da    PI: 6.5224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g40343.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.6e-142776255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      g +GVr++  + rW+AeIr p++   r r ++g+f  +e+Aa a++a   +++g
  Bradi3g40343.1.p 27 GLRGVRQRQ-WSRWAAEIRLPRT---RDRLWIGTFQHPEQAALAYDATLYCFYG 76
                      579***999.**********965...4********************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.9662790IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-152880IPR016177DNA-binding domain
PfamPF008473.6E-82874IPR001471AP2/ERF domain
PRINTSPR003672.2E-62839IPR001471AP2/ERF domain
CDDcd000184.66E-192992No hitNo description
Gene3DG3DSA:3.30.730.103.4E-212990IPR001471AP2/ERF domain
SMARTSM003805.8E-182996IPR001471AP2/ERF domain
PRINTSPR003672.2E-65066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGQAAGRATV RRRGGGPSSL APRKNLGLRG VRQRQWSRWA AEIRLPRTRD RLWIGTFQHP  60
EQAALAYDAT LYCFYGDEKQ LPPQRVYNFP AAPLPYVPPG KHGNLSNENI KAIAEKHAVD  120
LYNLVFAKNQ TPPPPPAPVK KEAAPAAAPP AAAYLPPPPP PTPIMAEHAV DYGAAPPPDV  180
GGYFDMDDDI VYSYNVEEIG EVFVDDDEPW ML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g40343.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236752.14e-87ethylene-responsive transcription factor ERF015
TrEMBLA0A0Q3HZI41e-152A0A0Q3HZI4_BRADI; Uncharacterized protein
STRINGSb07g027250.11e-32(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.15e-23ERF family protein