PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g40437.2.p
Common NameBRADI_3g40437, LOC100830441
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 1090aa    MW: 121260 Da    PI: 6.594
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g40437.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-21132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ F + ++L +gD+v+F +dg 
  Bradi3g40437.2.p 132 FCKTLTASDTSTHGGFSVPRRAAERIfpqldfSLQPPA-QELQARDLHDNTWTFRHIFRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDG- 222
                       99*****************************9777665.49************************************************655. PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        + +l+++++r+
  Bradi3g40437.2.p 223 -KHQLLLGIRRA 233
                       .66679999987 PP
2Auxin_resp117.61.1e-38258341183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wrs++
  Bradi3g40437.2.p 258 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKSSQWRSIQ 341
                       79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-42121261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-38124247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.52E-18131232No hitNo description
PROSITE profilePS5086311.716132234IPR003340B3 DNA binding domain
SMARTSM010191.3E-20132234IPR003340B3 DNA binding domain
PfamPF023621.1E-19132233IPR003340B3 DNA binding domain
PfamPF065071.1E-33258341IPR010525Auxin response factor
PfamPF023092.8E-99661061IPR033389AUX/IAA domain
PROSITE profilePS5174527.1119761060IPR000270PB1 domain
SuperFamilySSF542772.55E-79801055No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1090 aa     Download sequence    Send to blast
MMSAPESSCG GDEEAGMRRS KVNQELWYAC AGPLVALPPA GSLVVYFPQG HSEQVAASMR  60
KDADAQIPSY PNLPSKLICI LHNVTMEADP DTDEVYARMT LQPVSNVTQC DKEILLASEI  120
ALKQSRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPQ LDFSLQPPAQ ELQARDLHDN  180
TWTFRHIFRG QPKRHLLTTG WSLFISGKRL LAGDSVLFIR DGKHQLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGVLAAAAH AAANNSQFTI FYNPRASPSE FVIPFAKYQK AVYSNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKSSQWRSI QVAWDEAAPT ERRTRVSLWE  360
IEPVIAPFFI YPSPLFTAKR ARQPGMIDDE TSEMDNLFKR TMPWLGEDIC KKDLNSQNSI  420
APGLNLVQSL QWMNMQQNLS LAGTGMQPEL LNSLASKHVQ NLSAADISRQ ISFQPQFLQQ  480
NNIQFNTSLL PQQNQQNEQL AKVIAPNQLG NIMVPQKVDQ DRNSDQKQHV VTQSLPGGQA  540
SINITRPQLV AQAQFQQPQV ILQAQVQQQQ PLVQSHTVLH GGLQQIQLLP QQQPHLQKQQ  600
QSQHHQQVQH LVQEQQHIKV QPLQVSSDVN MNMQLSDNQM KLQLLKALQS QQHLTLEQQK  660
MFFDLQQQMV NCQSDPQQCT QGATQTVGIH NTIQYTTQQN SQPHQPVQDS PGNSIPIAKT  720
DIITSMGASS LSTVGGMQSL KTHNGPSSST SPCTNTNPVL LQSIPSSSKN QSSLTAAKTS  780
QSSVMLGPTI EQEMKSYQSV KPTMIIPKMT EQRPTTGQDC LNNNPHIDYL DTSSSATSVC  840
LSQADGSFQQ NFPPSSLNQH QLLRDTVPDN EFEVTDPRNN LLFGVNIDGQ LGLPLNADAL  900
LATSIENDKF MDQMAGNGIS NYMSSKESQQ EISSSMISHS FGVADMAFNS IDSAINDTPF  960
LNRNSRAPAP AHQRMRTYTK VHKRGAVGRS IDINRYSGYD ELKHDIARMF GIEGQLGDQS  1020
RVGWKLVYED HEKDVLLVGD DPWEDFLNCV RCIRILSPQE EMQMRLVGDI GDGFLPNQAC  1080
SSSDGGQPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661336242388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g40437.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3746130.0AK374613.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3070K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574778.20.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0Q3M3D40.0A0A0Q3M3D4_BRADI; Auxin response factor
STRINGBRADI3G40437.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]