PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g40651.1.p
Common NameBRADI_3g40651, LOC100823486
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 187aa    MW: 20143.1 Da    PI: 4.7185
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g40651.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.39.1e-3740138199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca dCvlap+fpa+ p+++a+vh++FGasnv++ll++lpe+er +a+++++ eAe r+rdPvyG++g+i++lq++++ ++  
  Bradi3g40651.1.p  40 RCAACKYLRRRCAVDCVLAPHFPASLPQRYAAVHRVFGASNVSRLLQSLPEKERGRAAETMAAEAEQRLRDPVYGCTGLISRLQEEIRDTQCR 132
                       6*******************************************************************************************9 PP

            DUF260  94 lallke 99 
                       la++++
  Bradi3g40651.1.p 133 LATTRA 138
                       999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8239140IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3740137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSASGNNNEN SISYVEAEEE DDYHQEEAGG GNAGNGNGRR CAACKYLRRR CAVDCVLAPH  60
FPASLPQRYA AVHRVFGASN VSRLLQSLPE KERGRAAETM AAEAEQRLRD PVYGCTGLIS  120
RLQEEIRDTQ CRLATTRATL AIAAANHAAI DVTERHKQDD DGQQQAAAAA ELVDPADEFL  180
DLDGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-33361307101LOB family transfactor Ramosa2.1
5ly0_B6e-33361307101LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g40651.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171546.12e-58LOB domain-containing protein 24-like
SwissprotP594689e-40LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0Q3HZN01e-133A0A0Q3HZN0_BRADI; Uncharacterized protein
STRINGEMT015736e-59(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-33LOB domain-containing protein 4