PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g41470.1.p

Common Name

BRADI_3g41470, LOC100823190

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 252aa MW: 27088.4 Da PI: 9.5956

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g41470.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.3	1.2e-26	24	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 lppGfrF+Ptdeelv +yL++k+ g +l++ v++++ ++++++Pwd+ + ++e e yfF+ r +++ +r a++sg Wk g++++ Bradi3g41470.1.p 24 LPPGFRFRPTDEELVLQYLRRKALGFPLPA-AVVPDLpRLHSLDPWDIL-TPGESEGEKYFFALRPSAA------RRtAAASGWWKPEGRERA 108 79**************************.7899998******6.445566799*98864......3436679********* PP NAM 92 vlsk....kgelvglkktLvfy............kgrapkge......ktdWvmheyrl 128 v++ +++lvg+k+ L+f + ++ + Wvmheyrl Bradi3g41470.1.p 109 VVAVcrsgRSHLVGVKRALAFVprahrgkkgsssS-----SSspapalTAGWVMHEYRL 162 99888888889*******9887665333321.....21344445789****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-35	22	190	IPR003441	NAC domain
PROSITE profile	PS51005	38.591	24	190	IPR003441	NAC domain
Pfam	PF02365	4.8E-20	25	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MESSPVVLVR QGQGEEQAEV LRALPPGFRF RPTDEELVLQ YLRRKALGFP LPAAVVPDLP 60 RLHSLDPWDI LTPGESEGEK YFFALRPSAA RRTAAASGWW KPEGRERAVV AVCRSGRSHL 120 VGVKRALAFV PRAHRGKKGS SSSSSSPAPA LTAGWVMHEY RLALPPHHKN GCYLAQSGSE 180 EWVVCRVFRR DTRPSSLSRR HTPAGHATMP MPASPSTSSS SSLSSSTSSC VTSGGSGSSS 240 DDDDLQEEAS S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-26	23	192	16	167	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-26	23	192	16	167	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-26	23	192	16	167	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-26	23	192	16	167	NO APICAL MERISTEM PROTEIN
3swm_A	6e-26	23	192	19	170	NAC domain-containing protein 19
3swm_B	6e-26	23	192	19	170	NAC domain-containing protein 19
3swm_C	6e-26	23	192	19	170	NAC domain-containing protein 19
3swm_D	6e-26	23	192	19	170	NAC domain-containing protein 19
3swp_A	6e-26	23	192	19	170	NAC domain-containing protein 19
3swp_B	6e-26	23	192	19	170	NAC domain-containing protein 19
3swp_C	6e-26	23	192	19	170	NAC domain-containing protein 19
3swp_D	6e-26	23	192	19	170	NAC domain-containing protein 19
4dul_A	6e-26	23	192	16	167	NAC domain-containing protein 19
4dul_B	6e-26	23	192	16	167	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g41470.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235343.1	1e-180	NAC domain-containing protein 83
TrEMBL	I1I8Z8	1e-179	I1I8Z8_BRADI; Uncharacterized protein
STRING	BRADI3G41470.1	1e-180	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11818	31	40
Representative plant	OGRP14562	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	6e-30	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Bradi3g41470.1.p
Entrez Gene	100823190