PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41510.1.p
Common NameBRADI_3g41510, LOC100824416
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 295aa    MW: 31756.4 Da    PI: 6.3098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41510.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10135182455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR+ri +++  L++l+P +    +k   Ka iL + ++Y++sLq
  Bradi3g41510.1.p 135 SHSLAERVRRERISERMRLLQTLVPGC----DKVTGKALILDEIINYVQSLQ 182
                       8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-17129197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-11129186No hitNo description
PROSITE profilePS5088815.567131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-16131195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-10137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MADFSSSHHS LLLKMPAAST TIDLSSSDVS SFLLHNQTHG QEGAANASAA MVEDGSLESS  60
SAVLDTYPQG SASVGRKRKA STADDSSATL SSAHSKDCKD GKSRRGKREK SSTDQEEAPK  120
GYIHVRARRG QATDSHSLAE RVRRERISER MRLLQTLVPG CDKVTGKALI LDEIINYVQS  180
LQNQVEFLSM RIASMSPVLY GFGLDSDGLL DQTQKIGGMF QEALAVPGAP VLNQEHSPAP  240
SQAMMDTTSY SLQGQGAISF SQSQDNGSYL MQSVGEQRQE LLNQLVFSNM CSFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41510.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2508100.0AK250810.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574844.10.0transcription factor bHLH137 isoform X1
TrEMBLI1I9070.0I1I907_BRADI; Uncharacterized protein
STRINGBRADI3G41510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-44bHLH family protein