PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41547.1.p
Common NameBRADI_3g41547, LOC100844898
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 148aa    MW: 16255.3 Da    PI: 10.2931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41547.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-1177122655
               AP2   6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       V w++ +g++ AeI+dp+    + +r++lg f tae+   a++aa+ +++g
  Bradi3g41547.1.p  77 V-WRRLWGKYSAEIWDPV----NaRRVWLGIFTTAEDTFSAYDAAAIRFKG 122
                       5.6777**********64....56***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.930.106.2E-5655No hitNo description
SuperFamilySSF556818.78E-51960No hitNo description
SMARTSM003802.7E-973137IPR001471AP2/ERF domain
PROSITE profilePS5103216.08173134IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1275123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-1675123IPR001471AP2/ERF domain
CDDcd000181.30E-1582132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MNSHQRNLVK IKDYSIVAPD TKNPLSDPYP SNLMFQTSVG PTGLSVGYMR PAPAPASDVQ  60
QRAEEQQKAM RRRNRAVWRR LWGKYSAEIW DPVNARRVWL GIFTTAEDTF SAYDAAAIRF  120
KGPGKAKLAA TNDAVATSGS PGDQELS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41547.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572462.11e-106ethylene-responsive transcription factor 8
TrEMBLA0A0Q3IEY61e-104A0A0Q3IEY6_BRADI; Uncharacterized protein
STRINGBRADI3G41546.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.13e-14ERF domain protein 10