PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41980.1.p
Common NameBRADI_3g41980, LOC100832880
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 468aa    MW: 50023.4 Da    PI: 8.2594
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41980.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-10319370556
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                       kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +
  Bradi3g41980.1.p 319 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDS 370
                       899*****************************************99998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-18315379IPR004827Basic-leucine zipper domain
PfamPF077163.2E-9316368IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.726317380IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-11319375No hitNo description
SuperFamilySSF579596.82E-12319369No hitNo description
CDDcd147035.85E-23320369No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDDSGGADPA RQHQHPYHQQ QQQLASPQQG GAAPVPRSPT PLDLAAYHRR LSASPRPPAH  60
PQAPCARLPS PYGGGGGHQI PSGGGHARSL SQPLFFSLDS LPPPPYADLA AARSPPSSTS  120
DPPPFGLPPR GHRRSHSDIP FGGFSQLSPP LPPPAPVKRE LPSAPEGGRS GDDAALYDLV  180
NAYMDLDGMD ALNSDDRDDS RASGTRAGSA AESSENEAES QSTSAQRKDG GGKSRHCRSL  240
SMDSFMGKLN FAAGDESPKL PLASSSGGGL SRSGSGSLDG GGAAALFGTE FANGEFSEAE  300
KKKIMANERL AEIALTDPKR VKRILANRQS AARSKERKMR YIQELEHKVQ VLQTEATTLS  360
AQLTMLQRDS GGLATQNNEL KIRLQAMEQQ AQLRDALNEA LTGEVQRLKL ATGETSDARM  420
SKMGLQQQMN SQLIQMQQLQ IQQQQQQQPS QTRQAQQQQQ QQSQQSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41980.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574872.10.0transcription factor RF2a
TrEMBLI1I9660.0I1I966_BRADI; Uncharacterized protein
STRINGBRADI3G41980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.33e-75bZIP family protein