PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g42197.1.p
Common NameBRADI_3g42197, LOC100837710
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SRS
Protein Properties Length: 308aa    MW: 31496.4 Da    PI: 8.4277
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g42197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.82e-661012482154
            DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 
                       +sgt+sCqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvpaa+rr+r+qq + +++      a +  kr+r++ + + s+++ t+ s +
  Bradi3g42197.1.p 101 GSGTISCQDCGNQAKKDCPHMRCRTCCKSRGFDCATHVKSTWVPAARRRDRHQQSHPSAAG-----APEPFKRPRDS-TGQPSSTTPTTSSGG 187
                       5799***********************************************9888776444.....46789999997.555666666666888 PP

            DUF702  95 eskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                       e+++    +++P+evsseavfrcvr+++vd+ +++e+aYqt+vsigGhvfkGiL+d G+++
  Bradi3g42197.1.p 188 EQQMVAAGERFPREVSSEAVFRCVRLGGVDEgADAEVAYQTTVSIGGHVFKGILHDLGPDT 248
                       8999999999*********************8899***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-60104247IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-27106148IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.6E-25197246IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAGFPLGGGG GGGHRGRGEQ PPVTTSNPGS EPGSSSAAAA FLYAAAAPRG SFQLWQHPQE  60
QHQHHHHHPF YGGAGASSII RFADDPAVAG SSSSRGRGSS GSGTISCQDC GNQAKKDCPH  120
MRCRTCCKSR GFDCATHVKS TWVPAARRRD RHQQSHPSAA GAPEPFKRPR DSTGQPSSTT  180
PTTSSGGEQQ MVAAGERFPR EVSSEAVFRC VRLGGVDEGA DAEVAYQTTV SIGGHVFKGI  240
LHDLGPDTSL GSGHRAEGSS PPSTAASGGA GAVSSSAVVM DPYPTPGGPY GAYGGGAPFF  300
HGHHHPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g42197.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235381.10.0protein SHI RELATED SEQUENCE 2
SwissprotO655179e-54SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLA0A0Q3JLN60.0A0A0Q3JLN6_BRADI; Uncharacterized protein
STRINGBRADI3G42197.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.12e-49Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]