PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g42627.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 516aa    MW: 57184.8 Da    PI: 9.6507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g42627.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.47e-0868118153
               AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ngkrkrfslgkfgtaeeAakaaiaarkkl 53 
                       ++++GVr    +gr+ A  +      n+k++++++g+++tae+Aa a+ aa+ ++
  Bradi3g42627.1.p  68 PRFTGVRKLA-SGRYSAVFY---HsvNKKSATVRVGTYDTAEQAAGARAAAKIAM 118
                       6799***887.8******55...4435578************9999999998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-568115IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-669119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-669120IPR001471AP2/ERF domain
PROSITE profilePS510329.4869131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MPPFQSGQSV GWSNTLPNYC VVSWPIQQLW YTTSHSFRRS PMAPPGTVSS PNPGGSSSSK  60
GVGGGTEPRF TGVRKLASGR YSAVFYHSVN KKSATVRVGT YDTAEQAAGA RAAAKIAMAS  120
APSRPPPTPP PPRLPWISTT SSSRIDSPSL KAALAMALVH HKRLPAPAGA AAATSAAASP  180
KSPPLVRWKR KAKDRKREIL RLREELKLLQ DGARREELEP PVASCRCHFF DGCGSLPPPG  240
GGEHWVDEVL RRRFLRLARW MEKRRRPDRS LPVSGSLEFN REDEIQQLSL SIDFLVELSD  300
GIFGKKEAGS SFATFSHQAV DFILAALRNI LISKREKELV EEIIDGLVAR LMKRMCTIPE  360
NTGTSDSGSV ECSDAQFSVQ HLFRKLGNEE FIGQRIILAV SQKISNVSER LLLVDPFDGS  420
FPDMHDNMFI MIQLIEFLIS DCMKNWLCCE QFDKKIFEEW ARSILKTRKD LEVLENINGL  480
YVVYIERVVG RLAREVAPAA HQGKLDLEVF SKLLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197RKAKDRKRE
2250265RRRFLRLARWMEKRRR
3251266RRFLRLARWMEKRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g42627.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755693.10.0protein MULTIPOLAR SPINDLE 1 isoform X1
TrEMBLA0A2K2D2Q60.0A0A2K2D2Q6_BRADI; Uncharacterized protein
STRINGBRADI3G42627.10.0(Brachypodium distachyon)