PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g43710.1.p
Common NameBRADI_3g43710, LOC100844394
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 469aa    MW: 51677.4 Da    PI: 4.6929
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g43710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.8e-34211122101
                       HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
      HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                       Fl k+ye+++d++++ ++sws ++  sfvv+++ efa ++Lp+yFkhsnf+SF+RQLn+YgF+k++ e+         weF++++F kg+k+l
  Bradi3g43710.1.p  21 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNSPEFAARLLPTYFKHSNFSSFIRQLNTYGFRKIEPER---------WEFANEYFVKGQKHL 104
                       9********************66679****************************************999.........*************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  94 lekikrkk 101
                       l++i r+k
  Bradi3g43710.1.p 105 LKNIYRRK 112
                       ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.6E-3617111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.14E-3217111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5817111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.5E-3021111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEASSGAGAR GGGGGGGPAP FLLKTYEMVD DPSTDAVVSW SDASDASFVV WNSPEFAARL  60
LPTYFKHSNF SSFIRQLNTY GFRKIEPERW EFANEYFVKG QKHLLKNIYR RKPIHSHSHQ  120
PGALPDNERA LFDDEIDRLA REKAALQADL WKFKQQQSGT MFQIEDLEQR VLNMEQRQGK  180
MIAFLQQASK NPQFVNKLVM MAESSSIFTD AFHKKRRLAG LDYATETAEA TSFYDEHSTT  240
SKQEMGNLLN QHFSDKLKLG LCPAIAESNL ITLSTQSSHE DNGSPHGNHP VCDRMGMECL  300
PLVPQMMELS DTGTSICPSK NSCFTPSVND EGLLPCHLSL TLASCSMDVD RSQACNADGS  360
TTIDEGRDDP AEATTATTDD NQKTPVDSDK ADAATQRRGD ARIATEAPAA PPAVVNDKFW  420
EQFLTERPGC SETEEASSGL SRDPSMEDKG QMEGNMKDGS EDMEQLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-221211117129Heat shock factor protein 1
5d5v_B3e-221211117129Heat shock factor protein 1
5d5v_D3e-221211117129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g43710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574986.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLI1I9S80.0I1I9S8_BRADI; Uncharacterized protein
STRINGBRADI3G43710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Representative plantOGRP97161012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-106HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]