PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g43900.3.p
Common NameBRADI_3g43900
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 359aa    MW: 40564.9 Da    PI: 6.5409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g43900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000724467223
                      EETTTTEEESSHHHHHHHHHH..T CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                       C dCgk+++++ +   H ++  H
  Bradi3g43900.3.p 44 ICADCGKPCRSQTEVDLHTKRtgH 67
                      6***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
SuperFamilySSF469343.51E-17102165IPR009060UBA-like
Gene3DG3DSA:1.10.8.103.7E-11103157No hitNo description
CDDcd142902.53E-20111159No hitNo description
PROSITE profilePS5003011.125111152IPR015940Ubiquitin-associated domain
SMARTSM001656.6E-4113151IPR015940Ubiquitin-associated domain
PfamPF006271.3E-6113149IPR015940Ubiquitin-associated domain
SuperFamilySSF1435034.58E-14305355IPR018997PUB domain
PfamPF094091.4E-11320355IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAGLSLRCGD CGVQLRSVEE AQAHAEATSH TNFAESTEAV LNLICADCGK PCRSQTEVDL  60
HTKRTGHAEF TDKTMEAAKP IDLEAPLKPA AEAMDVDASG SGEPQEMVAP EVNKEMLADL  120
EAMGFSTARA TRALHFSGNS TIEGAINWLS EHQDDPDIDE MPMVPANTNT DANKPSLTPE  180
EKKIKAQELR ERARKKKEEE ERRTEREKEK ERIRIGKELL EAKRMEEANE RKRMIELRRL  240
EKEEEKRARE KIRQKLEEDK AERRRKLGLP AEDPAASKPS PPPPVEEKKS ALPVRPATKA  300
DRMRDCLRNI KQQNKEEDAK VKRAFQTLLT YIGNVVKNPD EEKYRKIRLS NATFQICF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g43900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2505120.0AK250512.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf74j13, mRNA sequence.
GenBankAK3600590.0AK360059.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1109E20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574999.10.0chromatin assembly factor 1 subunit A isoform X1
TrEMBLA0A0Q3I1400.0A0A0Q3I140_BRADI; Uncharacterized protein
STRINGBRADI3G43900.10.0(Brachypodium distachyon)