PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g44143.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 200aa    MW: 21307.6 Da    PI: 7.1468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g44143.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-1591135347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +W++ E++l++++++++G+g Wk+ ar++  +R++ q+ s++qky
  Bradi3g44143.1.p  91 PWSEVEHKLFLEGIRKHGTGGWKRLAREFVVTRSAGQIASHYQKY 135
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8784140IPR017930Myb domain
SuperFamilySSF466893.52E-1285141IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1187138IPR006447Myb domain, plants
SMARTSM007171.3E-988138IPR001005SANT/Myb domain
PfamPF002497.5E-1391135IPR001005SANT/Myb domain
CDDcd001677.33E-1091135No hitNo description
Gene3DG3DSA:1.10.10.608.0E-1091135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVAELRRVLQ APQVETPPGW DLQEIAPTLA AGGEAGVTVG DDVGAPPPAD GEAASIPATD  60
CVASKEAVNQ KTTGKNQKKK AVPQKRNKAV PWSEVEHKLF LEGIRKHGTG GWKRLAREFV  120
VTRSAGQIAS HYQKYSIRQA KRRRNECKRP SIHDIDHDGT TGAAADHGSN QQPVAADGEP  180
ESGTTDDVSA GEEEAANYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g44143.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236797.11e-143transcription factor MYBS1
TrEMBLA0A2K2D3101e-144A0A2K2D310_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Representative plantOGRP1784722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.19e-22Homeodomain-like transcriptional regulator