PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g44370.1.p
Common NameLOC100833407
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 352aa    MW: 37761.6 Da    PI: 4.8175
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g44370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.64.5e-2527126185
          trihelix   1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                       rWt+qe+l+Lie++r +e r + +                   + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e+  ++ +
  Bradi3g44370.1.p  27 RWTRQEILVLIEGKRMVEVRGGGRGgrgrvaaaaaaaageaaaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWERAAAAAR 119
                       8**************887777632223446666677777777688******************************************974433 PP

          trihelix  76 sstcpyfdql 85 
                           p f  +
  Bradi3g44370.1.p 120 ---EPSFWAM 126
                       ...4777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-1027125No hitNo description
Gene3DG3DSA:1.10.10.604.6E-527101IPR009057Homeodomain-like
PROSITE profilePS500906.21427102IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSNAGDPAGA AAAAAATPSG RAPRLPRWTR QEILVLIEGK RMVEVRGGGR GGRGRVAAAA  60
AAAAGEAAAA LEPKWAAVAE YCRRHGVERG PVQCRKRWSN LAGDYKKIKE WERAAAAARE  120
PSFWAMRNDA RRERRLPGFF DREVYDILEG RGRGIVAGTS GGNAAGEEET AVRVDEEEEE  180
EEEEKGKEKE VGVAEEPVFD SGRAAGDDTL FSEDEEGELE ETPATTQASP PAVVALPISA  240
GTSSKDKQPR QQGQGAERGA SPTQQQQQQQ SGQKRQRTGD GDSEAGEEGT AGLQGKLLEI  300
LDRNNRMVAA QLEAQNVNWE RDREQRRDQA DSLAVVLGRL ADALGRIADK L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g44370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235471.10.0trihelix transcription factor ASR3 isoform X3
TrEMBLI1IA140.0I1IA14_BRADI; Uncharacterized protein
STRINGBRADI3G44370.50.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-51Trihelix family protein