PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g44470.1.p
Common NameBRADI_3g44470, LOC100834930
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 249aa    MW: 26567.7 Da    PI: 4.8989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g44470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-193888155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++++g
  Bradi3g44470.1.p 38 PRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARAIRG 88
                      6899******.**********843...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.86E-303896No hitNo description
PfamPF008472.3E-113888IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-213996IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-293996IPR001471AP2/ERF domain
PROSITE profilePS5103221.3383996IPR001471AP2/ERF domain
SMARTSM003805.8E-3339102IPR001471AP2/ERF domain
PRINTSPR003671.2E-84051IPR001471AP2/ERF domain
PRINTSPR003671.2E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MNFSFFSSSS SSSGKKSSAS KQRRQQQPPE ESGNNTTPRY LGVRRRPWGR YAAEIRDPAT  60
KERHWLGTFD TAEEAAIAYD RAARAIRGAS ARTNFAFPDL PPGSSVTPYL SPDIPADQLQ  120
QHHFYGGNAD VPALPLPAPS GYQIQGAAGD VHGHHLGNNN ESSYHMPAAM SYGGSGNANA  180
EVDMYAGGGG DGTWCEASEL DLGGSYDESN GVYFEDGYVH SPMFSPMPAA DEAVDAFQLG  240
GSSSSYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1739951471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g44470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126104e-82CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572568.10.0ethylene-responsive transcription factor LEP
TrEMBLI1IA280.0I1IA28_BRADI; Uncharacterized protein
STRINGBRADI3G44470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-24ERF family protein