PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g44700.1.p
Common NameBRADI_3g44700, LOC100841057
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 482aa    MW: 53183 Da    PI: 5.9798
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g44700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.3e-34731652103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++++ l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+ll
  Bradi3g44700.1.p  73 FLSKTYDLVSEPLLDGVISWGHAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEGFLRNNKHLL 156
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i r++s+
  Bradi3g44700.1.p 157 KTIVRRRSS 165
                       *****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3669162IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3269162IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5369162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-167396IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3073162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-16111123IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340112136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-16124136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDHANNNNPA TSSMDAALLL LEPKLEMEPP LHLPPPPTAN HHHHLIPPPP LAVPSEPPRP  60
LEALLQGPQL PPFLSKTYDL VSEPLLDGVI SWGHAGNSFV VWDPSTFARD VLPHNFKHNN  120
FSSFVRQLNT YGFRKVHADR WEFAHEGFLR NNKHLLKTIV RRRSSPTQQS SLQSASSIFR  180
KAQPCSSGEP TVDPELHILK REKKALLQEV ARLKQEHRQT IAHMSTLNQR LESAEDRQKQ  240
VVSFLAKLLR NPAFLRQLTM LREHKEIESS RVKRKFLKHA PHGSTDSDLQ SFLLEDTDLS  300
DGMLPGNFGL DGVEAPGDVG ALVQAFNTQQ DGLDFGTGAE LLGTASGAAH CQDPTIGRSK  360
GKNVLCPGLD GATSSEAECL VSLPDNMGMI PGTVLETAGK LMDADDEQIW GVDPYLQSSC  420
CDTRQQAYGS GASDPYLMEI ANKPEKFWEL DFEDLDDGDL HLDKCVIGDP ALQQQRGNMK  480
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-246516511123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g44700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235487.10.0heat stress transcription factor A-3 isoform X2
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A0Q3FND90.0A0A0Q3FND9_BRADI; Uncharacterized protein
STRINGBRADI3G44700.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Representative plantOGRP10024911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.15e-74heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]