PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45300.1.p
Common NameBRADI_3g45300
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 401aa    MW: 46176.1 Da    PI: 6.0727
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.61e-2082174181
          trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                       +Wt ++v++L+ a+ +++e+++ +            ++k++W+ vs  m e gf +sp+qC++k+++lnkryk+++e+ +++ t++ +++ ++
  Bradi3g45300.1.p  82 KWTSDMVKLLVSAVAYIDEDVEMDYgssrkkkhamlKRKGKWKLVSMSMNEMGFAVSPQQCEDKFNDLNKRYKRLTEILGRGtTCQIVENPQL 174
                       7**************88888885422344567888899*******************************************966887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-2080204No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEGNLPPRTL MPGALSDVEA SFEPHQQQFQ FAQPQLHQGM FATPANPVQE LSNGVKTSQS  60
DEDDALHHDR GGKAASQWHR VKWTSDMVKL LVSAVAYIDE DVEMDYGSSR KKKHAMLKRK  120
GKWKLVSMSM NEMGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGTTCQIVE NPQLLEGVSL  180
SGKLKEEARK LLSSKHLHYE EMCSYHNQNR LCLLEDPVLQ KSLRLALRSK DDHEKKSSIG  240
DDDEDDEMML SDDDEEDDEF NDDTEASAED HHHRSHGTER LQLDYGETWS GSHLSEVAAI  300
DMNKMLCERS GGLSAEKDSP GTHEIQILKQ HLKLKAQMLK FKQRQFKWLR FSKEKDRELE  360
KMRRENEKMR LENERLELEL TLKGLEMGIK PKIVIGDWKW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757160.10.0uncharacterized protein LOC100828617
TrEMBLI1IAC70.0I1IAC7_BRADI; Uncharacterized protein
STRINGBRADI3G45300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Representative plantOGRP1303645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-64sequence-specific DNA binding transcription factors