PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45360.2.p
Common NameBRADI_3g45360, LOC100821939
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 290aa    MW: 30500.4 Da    PI: 8.1164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45360.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-1382132155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rr+ h + Er RR+++ + f++L  llP++   p  K +K++i+ +A++YIk L+
  Bradi3g45360.2.p  82 RRALHAATERERRRQMSELFSNLHGLLPSL---P-DKTNKSTIVMEAIHYIKTLE 132
                       7999*************************7...3.9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1580150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.34281131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-1182132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-1082136No hitNo description
Gene3DG3DSA:4.10.280.107.1E-1582147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-687137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00898211253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAQENTNTDG KNNEALAAAN SSKFMSSGSG SRSKDSDLTD AGIVDKGKGI VKAEEQEEGG  60
GSKGKMMSIV QPADATAGGS CRRALHAATE RERRRQMSEL FSNLHGLLPS LPDKTNKSTI  120
VMEAIHYIKT LEGTLSELEK RKQDLARGIC LSSSAARATM MAHQPPAGGI FPAGAAAVAP  180
VGAAVPAVPV ELQKWSGQNV VLSLSGDDAH INVCSARRTG LLTMVVAILE KYGIEVVTSE  240
IASNSSRNRF TFHTHRVHAA NNLLGDNVSS EDIYKQAVSK ITSLLSGEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45360.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731551e-42AK373155.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022J13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572599.10.0transcription factor bHLH95
RefseqXP_010235515.10.0transcription factor bHLH95
RefseqXP_010235516.10.0transcription factor bHLH95
RefseqXP_010235517.10.0transcription factor bHLH95
TrEMBLA0A0Q3M5L30.0A0A0Q3M5L3_BRADI; Uncharacterized protein
STRINGBRADI3G45360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-16bHLH family protein