PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g45590.3.p

Common Name

BRADI_3g45590

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 255aa MW: 28553 Da PI: 6.5046

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g45590.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	35	55	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C C Fs nLk H++tH Bradi3g45590.3.p 35 CLGCYPAFSLDFNLKAHMKTH 55 999*****************9 PP
2	zf-C2H2	18.4	5.8e-06	61	86	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cg++F++ s L+ H rt H Bradi3g45590.3.p 61 HPCPypECGRRFTQESKLRAHFRTqH 86 689999*****************999 PP
3	zf-C2H2	12.6	0.00041	125	150	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+++ H Bradi3g45590.3.p 125 YVCPydGCAKAYIHEYKLNLHLKKeH 150 99*********************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	60	33	55	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.1E-4	35	56	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.38E-10	41	87	No hit	No description
SMART	SM00355	0.0057	61	86	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.3E-8	61	84	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.697	61	90	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	86	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.2E-9	117	147	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.31E-5	120	148	No hit	No description
SMART	SM00355	0.012	125	150	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.58	125	155	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	127	150	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MHGYFLLKSS MLGFCLSSTL LVLELWPFHY LSVGCLGCYP AFSLDFNLKA HMKTHFADNY 60 HPCPYPECGR RFTQESKLRA HFRTQHEKNP GMPAAMNRNA LGDHPHNTVK PPPVTPPVPS 120 AERPYVCPYD GCAKAYIHEY KLNLHLKKEH PNHFSDAGAQ AGPSRSTASK SSRRSRPSAT 180 AKMPLPKIPK RGAEYTTPSP AINIAEEHQW PRKVLYDDDS EETEEEGDKP ADMGWGRIAA 240 SSDDDDDEET EDEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g45590.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235528.1	1e-158	zinc finger transcription factor YY1 isoform X2
TrEMBL	A0A0Q3IGP5	0.0	A0A0Q3IGP5_BRADI; Uncharacterized protein
STRING	BRADI3G45590.1	1e-157	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	2e-31	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bradi3g45590.3.p