PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45880.3.p
Common NameBRADI_3g45880, LOC100842263
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 673aa    MW: 74593.9 Da    PI: 6.1836
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45880.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-21122222198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++ ++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F +  
  Bradi3g45880.3.p 122 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVAKDLHANEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLR-- 210
                       99****************************986555545..8************************************************3.. PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                        +++ l+v+v+r
  Bradi3g45880.3.p 211 GDNGDLRVGVRR 222
                       377778999997 PP
2Auxin_resp110.71.4e-36248330183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++++err+sGt++gv  + ++ W +S WrsLk
  Bradi3g45880.3.p 248 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNNKMSVGMRFKMRFEGDEAPERRFSGTIIGVGSMTTSPWADSDWRSLK 330
                       789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.89E-44111251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-40118237IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-20120222No hitNo description
SMARTSM010191.9E-20122224IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701122224IPR003340B3 DNA binding domain
PfamPF023621.7E-19122222IPR003340B3 DNA binding domain
PfamPF065071.5E-34248330IPR010525Auxin response factor
PfamPF023092.7E-6531577IPR033389AUX/IAA domain
PROSITE profilePS5174524.701541623IPR000270PB1 domain
SuperFamilySSF542772.11E-12543618No hitNo description
PfamPF023092.7E-7588632IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MVNSGVAGAL GSSSDALYRE LWHACAGPLV TVPRQGERVY YFPQGHMEQL EASTDQQLDQ  60
HLPLFNLPSK ILCKVVNVEL RAETDSDEVY AQIMLQPETD QSEPSSADPE PHEPEKCNAH  120
SFCKTLTASD TSTHGGFSVL RRHAEECLPP LDMTQNPPWQ ELVAKDLHAN EWHFRHIFRG  180
QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GDNGDLRVGV RRLMRQLNNM PSSVISSHSM  240
HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNNKMSVGM RFKMRFEGDE  300
APERRFSGTI IGVGSMTTSP WADSDWRSLK VQWDEPSAIP RPDRVSPWEL EPLVATSIQP  360
PQPPARNKRA RPPASPSIAP EHPPVFGLWK SPGESAQTFS FSGLQRTQEL YPSSPNSIFS  420
SSLNIGFKTK NEPSTLPNNQ FYWPIRDTRA DSYSASIDKV PASRKQEPTT AGCRLFGIEI  480
GSAVEATSPV VDVSGACHEQ PAASVDIESD QLSQPSHVNK SDAPAASSDR SPYETQSRQV  540
RSCTKVIMEG MAVGRAVDLT RLHGYEDLHQ KLEEMFDIQG ELSASLKKWK LVYTDDEDDM  600
MLVGDDPWSE FCSMVKKVYI YSYEEAKHLT PKAKLPVVVD AIKPSPSKPP LEPDMPQGGM  660
GNNAQVTDNN DC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01135713359Auxin response factor 1
4ldw_A0.01135713359Auxin response factor 1
4ldw_B0.01135713359Auxin response factor 1
4ldx_A0.01135713359Auxin response factor 1
4ldx_B0.01135713359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45880.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235548.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A0Q3JNE20.0A0A0Q3JNE2_BRADI; Auxin response factor
STRINGBRADI3G45880.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]