PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45997.1.p
Common NameBRADI_3g45997, LOC100830222
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 172aa    MW: 18719.8 Da    PI: 5.0029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45997.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-191263156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++y+GVr++k +grWv+eIr p   g + r++lg+f+tae+Aa a++ a+++l+g+
  Bradi3g45997.1.p 12 PQYRGVRRRK-WGRWVSEIRQP---GTKLRVWLGSFDTAEMAAVAHDVAALRLRGA 63
                      68*****998.**********8...325**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-291271No hitNo description
PfamPF008471.2E-121262IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-201372IPR016177DNA-binding domain
PROSITE profilePS5103223.1961371IPR001471AP2/ERF domain
SMARTSM003804.7E-341377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-301371IPR001471AP2/ERF domain
PRINTSPR003675.2E-101425IPR001471AP2/ERF domain
PRINTSPR003675.2E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDNNFRAAPS APQYRGVRRR KWGRWVSEIR QPGTKLRVWL GSFDTAEMAA VAHDVAALRL  60
RGARDAQLNF PGSVGWLPQP PTTDPTDIRA AAAEAAERVR REPALVSAAA NTTITINPGE  120
FDDDQLESPK LWDQMAEAML LDPPRWGQDG SGGDAAESSH SWPQGSLWDG C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-151374566ATERF1
3gcc_A2e-151374566ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45997.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058086e-80AP005808.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20.
GenBankAP0149586e-80AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126106e-80CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572623.31e-122ethylene-responsive transcription factor ERF022
SwissprotA2WZI47e-29DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z57e-29DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
SwissprotQ9C9I26e-29ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLI1IAL31e-120I1IAL3_BRADI; Uncharacterized protein
STRINGBRADI3G45997.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-11ERF family protein
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]