PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g46210.1.p
Common NameBRADI_3g46210
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 404aa    MW: 43222.6 Da    PI: 7.039
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g46210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.7e-1464145286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k  +++       ++p+fd+l+
  Bradi3g46210.1.p  64 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDIQCKNRIDTLKKKYKVEKSKSGS-------SWPFFDRLD 145
                       *************************************87889976333778**************99988886.......5******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.2E-2462145No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDDDGAASPS PSPSPSRSSS PLPLAEPVTV AAVPPGHLAV ALPIQKPAPS SGGGGGGGGR  60
EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV SSRDGYSKPP KSDIQCKNRI  120
DTLKKKYKVE KSKSGSSWPF FDRLDYLLAP VQKLGGNSGR AAGNSGSSNL AERTTAVMIP  180
RFNFPTRSRL KRRLPSPPQA SASSDSSDGF PPEPPVEAAN GKRQRVEEAV NGADSSVRVQ  240
GLRDLAQAIR RFGEAFERVE ASKREHELRM ERDRLNAARE LEDQRVQFFL KMQMEISKAN  300
NGTALGPLAA VAAAMIGNSA PATVPAVADG NGSRRTSMAP DVGTSSNHHV RYRVKDGRHH  360
QSLQHPSYQY NQNNAGEDAT GHGSGSNDNK EDDEVEDEEE ESQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g46210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575177.10.0trihelix transcription factor ASIL1
TrEMBLA0A0Q3FL410.0A0A0Q3FL41_BRADI; Uncharacterized protein
STRINGBRADI3G46210.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.14e-41sequence-specific DNA binding transcription factors