PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g46320.6.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 260aa    MW: 29058.7 Da    PI: 9.5481
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g46320.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-1880134256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Le+ F+++++++ e++  LA++l+L  rqV vWFqNrRa+ k
  Bradi3g46320.6.p  80 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLSLRPRQVEVWFQNRRARTK 134
                       678899***********************************************98 PP
2HD-ZIP_I/II120.39.9e-3980167188
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       +kk+rlskeq+++LE+sF+e+++L+ e+K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr
  Bradi3g46320.6.p  80 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLSLRPRQVEVWFQNRRARTKMKQTEVDCEYLKRCCETLTRENRRLQREVAELR 167
                       69************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1765137IPR009057Homeodomain-like
SuperFamilySSF466891.8E-1771137IPR009057Homeodomain-like
PROSITE profilePS5007117.31376136IPR001356Homeobox domain
SMARTSM003891.1E-1278140IPR001356Homeobox domain
PfamPF000462.3E-1580134IPR001356Homeobox domain
CDDcd000869.11E-1580134No hitNo description
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
SMARTSM003407.8E-21136181IPR003106Leucine zipper, homeobox-associated
PfamPF021837.0E-11136167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAHLTRVERT LVFLVVVRRS GSADSEVCRR GLDVNTVPVD DGASTPQSLL PSSMEVEVAV  60
RQAVDQEASE DEDNGGGRVR KKLRLSKEQS ASLEDSFKEH STLTLEQKSN LANRLSLRPR  120
QVEVWFQNRR ARTKMKQTEV DCEYLKRCCE TLTRENRRLQ REVAELRTFR PTPTYPFYHH  180
HHHLSGVSTA LPACHSCDNN NKATIYYAPP VVATPASITT VSSPGQRSPP SSTASSLFAR  240
PHFAPFTIHP VLRRQPSAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783RVRKKLR
2128136RRARTKMKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g46320.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755648.11e-176homeobox-leucine zipper protein HOX7
RefseqXP_024318098.11e-176homeobox-leucine zipper protein HOX7
SwissprotQ0E0A61e-89HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBLA0A2K2D3K40.0A0A2K2D3K4_BRADI; Uncharacterized protein
STRINGBRADI3G46320.11e-177(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-53homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]