PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g46680.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family EIL
Protein Properties Length: 446aa    MW: 49508.5 Da    PI: 4.7176
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g46680.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3360.14.1e-110443092263
                       XXXXXXXXXXXXXXXXXXXXXX..XXXXX........XXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
              EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa.......tgakksn.ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                       +lkkrmwkdqm+l++l++r  ++ +   +        +++++++  +  + rrk+m raQDg+L++Mlk+me+cna+GfvYg i+e g+p++g
  Bradi3g46680.1.p  44 DLKKRMWKDQMRLMKLEGRAGNRGAVPPVPagdarpsAEEQEQEdSPDVRCRRKAMLRAQDGVLRHMLKMMEACNARGFVYGVIDEAGEPMSG 136
                       9******************99976433322444444333333333677799****************************************** PP

                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--H CS
              EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkel 179
                       +sdsLr+WWk++v fdr+gp+a++       ++++ +s+     s+ h+l+ +qD tlgS+Lsal+qhc+ppqr+fple+g++pPWWPtGke 
  Bradi3g46680.1.p 137 SSDSLRGWWKDNVIFDRTGPMALAAG-----LSGDTNSSPLGLASYLHRLQGIQDNTLGSVLSALIQHCEPPQRNFPLERGLAPPWWPTGKEP 224
                       ***********************988.....6666666677889************************************************* PP

                       HHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX CS
              EIN3 180 wwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah 263
                       wwg++g ++++qg+ppy+kphdlkkawk+s+L+avikhmsp+++++r+l++qsk+lq+kmsa+es ++++vl+qee++ ++++ +
  Bradi3g46680.1.p 225 WWGTQGeMQAHQGAPPYRKPHDLKKAWKISLLSAVIKHMSPRFDQMRRLVWQSKRLQQKMSARESETWSKVLRQEEALNRRFKNS 309
                       *****************************************************************************99887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.2E-11344300No hitNo description
Gene3DG3DSA:1.10.3180.106.6E-64175309IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-56178303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGHVDSTGAF LHDLEALDQQ QEQEQEQEQE EIIDYEPESI EISDLKKRMW KDQMRLMKLE  60
GRAGNRGAVP PVPAGDARPS AEEQEQEDSP DVRCRRKAML RAQDGVLRHM LKMMEACNAR  120
GFVYGVIDEA GEPMSGSSDS LRGWWKDNVI FDRTGPMALA AGLSGDTNSS PLGLASYLHR  180
LQGIQDNTLG SVLSALIQHC EPPQRNFPLE RGLAPPWWPT GKEPWWGTQG EMQAHQGAPP  240
YRKPHDLKKA WKISLLSAVI KHMSPRFDQM RRLVWQSKRL QQKMSARESE TWSKVLRQEE  300
ALNRRFKNSL QITPLDGDDE DDGDTADGLE DVVRGARDKR RCATTVPSSG GGGGSGAGGK  360
WPRIPRGGGE QLADVQAEES PINELMELYY NCLQGDDDDG QEKHDVAVVP LGVPGGVVDD  420
AAQQFLLDIL GTCPEVDRVL RLMEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A8e-491793064130Protein ETHYLENE INSENSITIVE 3
4zds_B8e-491793064130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g46680.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572647.20.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ51e-90EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9LX165e-91EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9SLH03e-90EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLI1IAU40.0I1IAU4_BRADI; Uncharacterized protein
STRINGBRADI3G46680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.12e-92EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]
  4. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  5. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  6. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  7. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  8. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  9. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  10. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  11. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]