PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g47847.1.p
Common NameBRADI_3g47847, LOC100833814
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 928aa    MW: 105180 Da    PI: 9.4354
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g47847.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.6e-123344041690
                       EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       l lp   a + +    +++ + l+d++g+s +++l  +   g+  + +GWkeF +++ +k+gDf++F+++g+s+f
  Bradi3g47847.1.p 334 LLLPPMIAPKLKDL--TNRRVYLKDSEGKSSKIRL--SVVEGSLAFYQGWKEFISDHSIKSGDFLLFEYIGKSTF 404
                       55566555555333..4557***************..7778889999***********************98776 PP
2B3352.6e-118419141387
                       TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       + +l lp++  ++  +++ ++   ++l+d+  r W v +    +s  + +t+GW++ v an+L++gD++++  d +
  Bradi3g47847.1.p 841 QTWLELPNPLSNAVwQKQRQNRSVIMLKDPMKRLWPVFY--HENSLFVGFTRGWESIVAANNLQTGDVCTLLKDLD 914
                       5567788888766684444555589**************..9****************************985433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-16316416IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-16317420IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.885319418IPR003340B3 DNA binding domain
CDDcd100173.72E-11320415No hitNo description
SMARTSM010191.9E-5322418IPR003340B3 DNA binding domain
PfamPF023627.1E-10331404IPR003340B3 DNA binding domain
PROSITE profilePS508639.742829927IPR003340B3 DNA binding domain
SMARTSM010191.8E-4834925IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-11836919IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-10836923IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-9839922IPR003340B3 DNA binding domain
CDDcd100178.55E-9864926No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MSGGVPELAC RKRLRSCDVN VKKKEEGRKK MHSEEEEEEE RMEMNYMKVF AANSEKKRRE  60
MPTNLSDEEE EEETWDTDKT AKKMVHSGHG KATDRKASMA TFEKVKKKKL VSSDGGEKKM  120
QSGDRDRDKR KNMLFPFNKN KDPLKEKNWK MPSRHSSDKK MGSGDHHKDK MRNRPQPLEK  180
SKHSEKEKMK ILSSHNGEKK NMWGHDHEKD KRGSTPLQCS KNEMKKRIMQ NTCDAKEKKT  240
WPSDRMKKKK NASLVLSKEN KIQTLTNNKR KNTNLTVSNK EKKMRTDVKD NKEESDGRWK  300
GHNEVPKVQS GDKEKKRNLP AFFKFIRNNF QEFLLLPPMI APKLKDLTNR RVYLKDSEGK  360
SSKIRLSVVE GSLAFYQGWK EFISDHSIKS GDFLLFEYIG KSTFSGMSTF SVRVFGIDSC  420
ERLSFNVERQ GGKKEQKESH APDDLVPCHG VRNSEDMNGH LYDSGEYLGS KGTKSKPNGY  480
MNNHEIASCN LVFKSMNAAS GTSHMAADSK EDLSRAVSGF ECGPLVALDN KDGYLANGEN  540
KAKNIYPIFS KGKSKHDVIE ITDEPPVAQE TEDAAKLTTL DTASEMHDVT AITKLRRNEI  600
ISVNDAAPLA QEQADAVELK TFCCHIEDSS MKKESGLKVT TATKCPEMHD SDEGLRRKQE  660
GNAVKLKCTT DLDNPNNGKM HIIGNVCNNY EAPGGSQCLE KSKKAIVSGH GDLDSSELIR  720
PENRLKTEKK PVVNCSAIRL NPADESYLQP MAGTTFQLQT ERGQPEPDIN IVSRQRNNIP  780
VRANHVVACQ SEHNFLRQGD MKSSSHVIPV PLLPVKSEVL ESDDHSRLKT GMQFCIPSTS  840
QTWLELPNPL SNAVWQKQRQ NRSVIMLKDP MKRLWPVFYH ENSLFVGFTR GWESIVAANN  900
LQTGDVCTLL KDLDEVEHVY HVEITRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243249DRMKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g47847.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575292.20.0B3 domain-containing protein Os02g0598200 isoform X1
RefseqXP_014755477.10.0B3 domain-containing protein Os02g0598200 isoform X1
TrEMBLI1IB860.0I1IB86_BRADI; Uncharacterized protein
STRINGBRADI3G47847.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Representative plantOGRP1458744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-09B3 family protein