PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g48070.4.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 318aa MW: 32426.6 Da PI: 7.7659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g48070.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	253	298	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k s +++L +Ave+Ik Lq Bradi3g48070.4.p 253 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIKGLQ 298 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.399	247	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-15	250	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.58E-12	251	302	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.4E-15	252	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	253	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	253	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MRRFLPGGGG GGGGGGGEPS SSSSSHGGDQ HAAAGSNDGG LRYGGGDISL GRGHDQQLHH 60 QAQFRGAGGE AEMKGRDDGG ADLLARHSSS PAGFFSNLMV DDGSRAGAAA GGAEAHRSGT 120 KMKSQLGFTA GGPHSASHLS RISEGAALFP GAAAAGHSHS GGSGGEHGAV SRSFSAGGGG 180 GAGGFSIVGP WDESRDIIGT LDIGGYESQF SGMASPSSLE LAGMDKYMQA QQQQDQVAFK 240 VRAKRGCATH PRSIAERERR TRISEKLRKL QDLVPNMDKQ TSTSDMLDLA VEHIKGLQSQ 300 LQAMKHEQDK CTCCSKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g48070.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249954	1e-165	AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235663.1	1e-162	transcription factor bHLH128
Swissprot	Q8H102	6e-55	BH128_ARATH; Transcription factor bHLH128
TrEMBL	I1IBC2	0.0	I1IBC2_BRADI; Uncharacterized protein
STRING	BRADI3G48070.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	6e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g48070.4.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]