PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g49660.1.p

Common Name

BRADI_3g49660, LOC100822452

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 200aa MW: 20912.5 Da PI: 10.5953

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g49660.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116	4.8e-36	46	147	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg... 88 a+ k++ +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss + Bradi3g49660.1.p 46 APSKKSVKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSIVAATGSGTTPAAFVsssAPSTSSSSR-----Hgtl 133 7899************************************************************99999666221122222222.....1233 PP TCP 89 .............k 89 + Bradi3g49660.1.p 134 lgkrprqdfdgasS 147 44444444544430 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.4E-31	51	136	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.452	52	106	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MSSRDIATAG GIFHVYEHLP MTASTAWAPA AGADAGGGGL LLSSPAPSKK SVKDRHSKVN 60 GRGRRVRMPI VCAARVFQLT RELGLKSDGQ TIEWLLRQAE PSIVAATGSG TTPAAFVSSS 120 APSTSSSSRH GTLLGKRPRQ DFDGASSAFW ASALPRQADA WGFSPLETQA AESYMPMAHH 180 LNLVAALSGA ARRAEEETR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g49660.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095725	2e-98	FP095725.1 Phyllostachys edulis cDNA clone: bphyem123a10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572742.1	1e-142	transcription factor TCP7
Swissprot	Q9FMX2	4e-39	TCP7_ARATH; Transcription factor TCP7
TrEMBL	I1IBW4	1e-141	I1IBW4_BRADI; Uncharacterized protein
STRING	BRADI3G49660.1	1e-141	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-34	TCP family protein

Link Out ? help Back to Top
Phytozome	Bradi3g49660.1.p
Entrez Gene	100822452