PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50050.1.p
Common NameBRADI_3g50050, LOC100831851
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 258aa    MW: 27319.9 Da    PI: 8.0234
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY214.63.2e-66212155170
             YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee.................lleelk 76 
                       s +eq+Cyv+Cn C+tilav vP +sl+k+v+vrCGhC++llsvnl+          a + +l++sl  +                 l++  +
  Bradi3g50050.1.p  21 SPTEQLCYVHCNCCDTILAVGVPCSSLYKTVAVRCGHCANLLSVNLRGLLlppaAPPANQPQLSHSLLSPtsphgllddvafqttslLMD--Q 111
                       578********************************************998554222334556777776668999*888888777653222..2 PP

             YABBY  77 veeenlksnvekeesastsvssekl..........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                        +++nl+s   + +s+s+  s++ +          ++++++ ++ +p +++PPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaakn
  Bradi3g50050.1.p 112 ASGNNLSSGGFTGRSNSSCASNMPVmpmpaatkpaQQETEQTTKSAPSTNKPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKN 204
                       2333333332222222222222221355899888444444555556669******************************************** PP

             YABBY 160 WahfPkihfgl 170
                       WahfP+ihfgl
  Bradi3g50050.1.p 205 WAHFPHIHFGL 215
                       *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.3E-6922215IPR006780YABBY protein
SuperFamilySSF470954.84E-8155208IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.7E-4162207IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSSSSSSSSA VFNLQDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLYKT VAVRCGHCAN  60
LLSVNLRGLL LPPAAPPANQ PQLSHSLLSP TSPHGLLDDV AFQTTSLLMD QASGNNLSSG  120
GFTGRSNSSC ASNMPVMPMP AATKPAQQET EQTTKSAPST NKPPEKRQRV PSAYNRFIKD  180
EIQRIKAGNP DITHREAFSA AAKNWAHFPH IHFGLIPDQG FKRSFVKAQD GAEDMLLKDS  240
LYAAAAAAAA NMGVTPF*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569970.10.0protein YABBY 4
SwissprotA2X7Q31e-116YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-116YAB4_ORYSJ; Protein YABBY 4
TrEMBLI1IC110.0I1IC11_BRADI; Uncharacterized protein
STRINGBRADI3G50050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Representative plantOGRP46851123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-49YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]