PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50220.1.p
Common NameBRADI_3g50220, LOC100836770
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25644.4 Da    PI: 4.5266
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-183386456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +++ft+eq++ Le+ F++   ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Bradi3g50220.1.p 33 KRRFTDEQVRSLESTFHSrRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 86
                      458**************9899********************************9 PP
2HD-ZIP_I/II120.68.1e-3932124293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       +krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++ L+++yd l+++ e+L++e+ +L+++l+e
  Bradi3g50220.1.p  32 RKRRFTDEQVRSLESTFHSRRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFADLRAHYDDLHARVESLKQEKLTLAAQLEE 124
                       8*****************9999*******************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-172090IPR009057Homeodomain-like
PROSITE profilePS5007117.3132788IPR001356Homeobox domain
SMARTSM003895.1E-172992IPR001356Homeobox domain
CDDcd000868.06E-163289No hitNo description
PfamPF000463.9E-163386IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-193493IPR009057Homeodomain-like
PRINTSPR000315.2E-75968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000315.2E-76884IPR000047Helix-turn-helix motif
PfamPF021833.5E-1388129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MESDCQFLLA PPMYGDGQFL QQQLMGGSGE IRKRRFTDEQ VRSLESTFHS RRAKLEPREK  60
AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDFADLRAH YDDLHARVES LKQEKLTLAA  120
QLEELKEKLS ERQDQSGSSD DGAEHEVDHD KDVRDNKVSC VVEEEEAEGA APVVDVVSDE  180
SAVGWYEYER LAYGGGAAAA LPEPFCATPE LWETTWPLVE WNAVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50220.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674561e-124AK367456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569986.11e-165homeobox-leucine zipper protein HOX24
SwissprotA2X7U14e-83HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLI1IC311e-164I1IC31_BRADI; Uncharacterized protein
STRINGBRADI3G50220.11e-164(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Representative plantOGRP1459844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.28e-32homeobox 7