PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50625.1.p
Common NameBRADI_3g50625, LOC100834626
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 236aa    MW: 25042.8 Da    PI: 5.3289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50625.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-1958107255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+++++g
  Bradi3g50625.1.p  58 TYRGVRMRA-WGKWVSEIREPRK---TSRIWLGTFDTAEMAARAHDVAALAIKG 107
                       69****998.**********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.10358118IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1958118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3058119IPR001471AP2/ERF domain
SMARTSM003803.1E-3458124IPR001471AP2/ERF domain
PfamPF008475.5E-1358107IPR001471AP2/ERF domain
CDDcd000181.15E-2959120No hitNo description
PRINTSPR003673.9E-115970IPR001471AP2/ERF domain
PRINTSPR003673.9E-118197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEEEKGALSP ASNASTTNVS NRSCCGSPMA TSSSSDDSSG GGGGGGRKRP RRDLKHPTYR  60
GVRMRAWGKW VSEIREPRKT SRIWLGTFDT AEMAARAHDV AALAIKGPRA AAAHLNFPEL  120
ANDLPRPATA SPEDVRAAAA LAAHMVVDRA PPVADTGNAE ADEEPSSRPL PLAGDGSIAS  180
VDLALFDLPD FLHEFGFALP PPSTTCDLSS WQHDVAATTD DFRFEPAPLL LWEHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-17551221176Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50625.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3549956e-84AK354995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1014H03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572772.11e-170ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ72e-43ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0Q3FR951e-169A0A0Q3FR95_BRADI; Uncharacterized protein
STRINGGRMZM2G041839_P011e-62(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]