PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g50930.3.p
Common NameLOC100828697
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 725aa    MW: 75254.2 Da    PI: 6.2711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g50930.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.62.8e-873657233374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + L ++A+a ++g+ + a+++Larl+++  p g+p+ R a+y++eAL   la+ ++   +  +++ ts+ +++ +laa+k fs++sP+l+f++
  Bradi3g50930.3.p 365 DELAAAAKAAEAGNSTGAREILARLNHQLPPVGKPFLRSASYLKEALLLALAD-GQ---HHGASRLTSPLDVALKLAAYKSFSDLSPMLQFAN 453
                       7899************************************************9.33...3334555555669********************* PP

              GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       +ta qa+l++++ +  +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s++s++  el+ t+++L++fA+ lg+pfefn++ 
  Bradi3g50930.3.p 454 FTATQALLDEIACSaaSCIHVIDFDLGVGGQWASFLQELAHRRgaggVALPLLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAV- 545
                       *********988776699************************966444499****************************************8. PP

              GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++++++ eL   + +E +aV+l +          +     + +L+lvk+l Pk+vv ++  ad+ + +F ++fl++++ ++ l+dsl+a 
  Bradi3g50930.3.p 546 --SIDAFSPAELISPTgDEIVAVSLPVGCSARA---PP----LPVILRLVKQLGPKIVVAMDYGADRADLPFSQHFLHCFQSCMFLLDSLDAA 629
                       ..9999***999666689********9777665...44....556*********************************************988 PP

              GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        + +s+ + k+Er+l++++++++v  + ++      + + Wr+ + +aGF+pvpls+ a++qa++ll++v+++g++ve++   l+l W++ +L
  Bradi3g50930.3.p 630 -GIDSDSACKIERFLIQPRVEDAVLGRRKA-----DKSMAWRNVFAAAGFTPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVGLTLFWQRGEL 716
                       .89*********************988877.....78899***************************************************** PP

              GRAS 368 vsvSaWr 374
                       vsvSaWr
  Bradi3g50930.3.p 717 VSVSAWR 723
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.157337703IPR005202Transcription factor GRAS
PfamPF035149.6E-85365723IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MRAALLGAER NGGVDHHLAG RGSGKDLFWA AAGGLEPRSV LDCSRRLSPP NSTSTLSSSL  60
GGGAADSTGV AAVSESSAGD AEATKWGAPG DHGGGGGGGG GRKEDWGGGG CELPPIPGAL  120
DVGLVGGEGW DAMLGNAAAA AGQDQTFLNW IMGAAGDLEL PVPPLPMHQQ PLVDNAGFGF  180
SAVDPLGFSL DHPLGGVSSD LSSSGAMSHT TTGGGGSGGG SKASSAFGLF SPEAASLQPP  240
PPPMLFHEGI DTKPPLLASQ PPGLLNQYQH QPPPPAAAFF MPLSSFPDHN QRSQLHQPPP  300
KRHHSVPDDL YLTRNHLGTS AAGQGLAFSP LHGSVPFQLQ PSPPPPLRGA MKTTAAEAAQ  360
QQLLDELAAA AKAAEAGNST GAREILARLN HQLPPVGKPF LRSASYLKEA LLLALADGQH  420
HGASRLTSPL DVALKLAAYK SFSDLSPMLQ FANFTATQAL LDEIACSAAS CIHVIDFDLG  480
VGGQWASFLQ ELAHRRGAGG VALPLLKLTA FVSAASHHPL ELHLTQDNLS QFAADLGIPF  540
EFNAVSIDAF SPAELISPTG DEIVAVSLPV GCSARAPPLP VILRLVKQLG PKIVVAMDYG  600
ADRADLPFSQ HFLHCFQSCM FLLDSLDAAG IDSDSACKIE RFLIQPRVED AVLGRRKADK  660
SMAWRNVFAA AGFTPVPLSN LAEAQADCLL KRVQVRGFHV EKRGVGLTLF WQRGELVSVS  720
AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2743972380375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g50930.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570043.10.0scarecrow-like protein 27
TrEMBLI1ICC30.0I1ICC3_BRADI; Uncharacterized protein
STRINGBRADI3G50930.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-93GRAS family protein