PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g51510.1.p

Common Name

BRADI_3g51510, LOC100821218

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 367aa MW: 37644.5 Da PI: 8.5867

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g51510.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.5e-39	59	120	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Bradi3g51510.1.p 59 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 120 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-32	55	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	61	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MEEMMMPAGN QNPNAANQNQ NNQPPAPPSG PEGVQRAPAA APAAAAAAGG AERKARPQKE 60 KAINCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSSS 120 SSSAAAAAVS TSAAAGTVPA ANKNPKLMLQ HEAGGGAHDL NLAFPHHHGR VLHPSEFAAS 180 FPSLESSAVM AAANGGGRGG MHQGAFSAME LLRSTGCYVP LPQGMQLGAM PPEYGFALGP 240 EFRMPAPPHQ QQQQHHQQQQ QVQNMLGFSL DTGAGGGYGA GLQGAQESAA SGRMLFPFED 300 LKPGVVSAAA GGATGGDQFE HSKADQGQGQ GGNNSGGHET LGFWNNSMIG NGGSNDAGGG 360 GGGGSW*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MEEMMMPAGN QNPNAANQNQ NNQPPAPPSG PEGVQRAPAA APAAAAAAGG AERKARPQKE  60
KAINCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSSS  120
SSSAAAAAVS TSAAAGTVPA ANKNPKLMLQ HEAGGGAHDL NLAFPHHHGR VLHPSEFAAS  180
FPSLESSAVM AAANGGGRGG MHQGAFSAME LLRSTGCYVP LPQGMQLGAM PPEYGFALGP  240
EFRMPAPPHQ QQQQHHQQQQ QVQNMLGFSL DTGAGGGYGA GLQGAQESAA SGRMLFPFED  300
LKPGVVSAAA GGATGGDQFE HSKADQGQGQ GGNNSGGHET LGFWNNSMIG NGGSNDAGGG  360
GGGGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g51510.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582413	9e-84	KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756973.1	0.0	dof zinc finger protein 2 isoform X2
Swissprot	B9F1L8	4e-90	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	I1ICJ0	0.0	I1ICJ0_BRADI; Uncharacterized protein
STRING	BRADI3G51510.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	Bradi3g51510.1.p
Entrez Gene	100821218

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]