PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g51685.1.p

Common Name

BRADI_3g51685, LOC100824307

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRF

Protein Properties

Length: 215aa MW: 22555.5 Da PI: 10.0486

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g51685.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79	4.6e-25	130	174	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e Bradi3g51685.1.p 130 EPEPGRCRRTDGKKWRCSRDVVQGHKYCERHVHRGRGRSRKPVEG 174 69****************************************986 PP
2	QLQ	51.9	2.3e-18	64	100	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s +T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k Bradi3g51685.1.p 64 SVLTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 100 5689********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-5	64	100	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.619	65	100	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.8E-11	66	99	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.31	130	174	IPR014977	WRC domain
Pfam	PF08879	7.6E-21	131	173	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MGEEKEADSP QPPPSKLPRL SRGDSNAGAV TMAASSPLVL GLGLGLGGGE RQQDVAAQAA 60 DSKSVLTFMQ QQELEHQVLI YRYFAAGAPV PVHLVLPIWK SVAASSFGPN RFPSLIGLGS 120 LCFDYRSSME PEPGRCRRTD GKKWRCSRDV VQGHKYCERH VHRGRGRSRK PVEGGASAAA 180 AQHNGTTTSG LGLGGFSSGH GVLLAAHGAS TRAT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g51685.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099737	1e-169	FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235821.1	1e-156	growth-regulating factor 10
Swissprot	Q6EPP9	4e-91	GRF10_ORYSJ; Growth-regulating factor 10
TrEMBL	I1ICL4	1e-154	I1ICL4_BRADI; Uncharacterized protein
STRING	BRADI3G51685.1	1e-155	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6221	30	51
Representative plant	OGRP460	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	6e-38	growth-regulating factor 3

Link Out ? help Back to Top
Phytozome	Bradi3g51685.1.p
Entrez Gene	100824307

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]