PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g52500.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 224aa    MW: 24798.9 Da    PI: 7.2722
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g52500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.61.5e-091203655
           G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                      m++kgLtl+h+kSHLQkYR+
  Bradi3g52500.4.p  1 MGMKGLTLYHLKSHLQKYRM 20
                      899****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-8121IPR009057Homeodomain-like
PfamPF143796.2E-2565109IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGMKGLTLYH LKSHLQKYRM GKQSKKDTGF ETSRAAFATH GISFSSATPP VVPSAGNNNM  60
GETPLADALR YQIEVQRKLH EQLEVQKKLQ MRIEAQGKYL QTILEKAQKN LTYDSSAATN  120
LEATRSQLTD FNLALSGFMD DATQVCEQNN GELAKVISED NLRAGNLGFQ LYHGVQDAED  180
VKCTADEDLL LLDLNIKGGY DHRLSSHGMR RGDADLTVGQ HRR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g52500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570169.21e-165myb family transcription factor PHL11
TrEMBLI1ICX01e-165I1ICX0_BRADI; Uncharacterized protein
STRINGBRADI3G52500.11e-166(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-37G2-like family protein