PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g52837.1.p
Common NameBRADI_3g52837, LOC100838704
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 453aa    MW: 48373.5 Da    PI: 6.864
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g52837.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.21.1e-29192249458
       ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee...gtaaalkCaACgCHRnFHRreve 58 
                       +rY+eCl+NhAa+lG+h++DGCgEfmps+      + aaal CaACgCHR+FHRre++
  Bradi3g52837.1.p 192 WRYRECLRNHAARLGAHVLDGCGEFMPSSAPGegsAAAAALACAACGCHRSFHRREPV 249
                       69*************************9654331345899***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-7184247IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.0E-27192248IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-25193247IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.028194247IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.5E-29348416IPR009057Homeodomain-like
SuperFamilySSF466891.47E-18350415IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-24356412IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEYKRSSHVE EDDDMEEEDE MEEDDDEEEE EEEDEEEEMK GRHHHHHQHH YAAAAPAATG  60
GAPPPHQHAH GHVLVSSAAA SSPSSLLESA AFSRPLLPPN SSLISSPPGF LSPHDHHHHQ  120
QQQQPHRRRG ERERERTVES TGEQQRQRQQ EPARNGVLGG GSGGPMPPPA APAALALVTG  180
GSAAAAGEPL PWRYRECLRN HAARLGAHVL DGCGEFMPSS APGEGSAAAA ALACAACGCH  240
RSFHRREPVV AAASPSPSPA SAVVSPSATP RAGAGAGANP NSRLIPLLLA PPHMQQQKRP  300
PVVVPGSSPM SAPAALAVAE SSSEELPRPP PQQQHPPHAQ AAAMAGSASA PAAPGKKRFR  360
TKFTPEQKDR MLEFAHRVGW RIHKPDGGAV DAFCDQVGVS RRVLKVWMHN NKHLAKTSPS  420
PSQPLPPLHH DPPPAPHHHH HHPAQHHQQH DA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-203574181879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g52837.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572860.10.0zinc-finger homeodomain protein 7
SwissprotQ8S3Q91e-76ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLI1ID170.0I1ID17_BRADI; Uncharacterized protein
STRINGBRADI3G52837.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-21homeobox protein 31