PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g54640.1.p
Common NameBRADI_3g54640, LOC100834520
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 311aa    MW: 34279.9 Da    PI: 8.2659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g54640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-1667113455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Bradi3g54640.1.p  67 VHNLSEKRRRCRINEKMKALQSLVPNS-----SKTDKASMLDDAIEYLKQLQ 113
                       6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-1961123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.01263112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-2066132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-1866117No hitNo description
PfamPF000105.2E-1467113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1969118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMDGGMDQGR FDLIMRHQQQ QQHQGFGTMA GLAGAPCDSE EALGSSESEP AGRPARARGK  60
RARAAEVHNL SEKRRRCRIN EKMKALQSLV PNSSKTDKAS MLDDAIEYLK QLQLQVQMLS  120
MRNGLYLPQV NLPVGAPEPP AAPQMPATVN QNSIEASNPL VALLPMNQIS GAQHSFDPPN  180
HDLRQHHEPF VLSGVPCTTT RGPRFPPGSS RPDLESLQLT VSAEMILQEN VMLEHRPSCT  240
QHAVSVPGHD MKLVRQETPV PRPDHPGGCS IWKRQSQEMM PKTTESFLFM PHLHRFQSSD  300
ADRGLRSGSK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g54640.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606569e-99AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235938.10.0transcription factor SPATULA isoform X3
TrEMBLI1IDN50.0I1IDN5_BRADI; Uncharacterized protein
STRINGBRADI3G54640.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-31bHLH family protein