PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g54817.1.p
Common NameBRADI_3g54817, LOC100836977
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 302aa    MW: 33462.4 Da    PI: 6.9581
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g54817.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.4e-49101501128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       lppGfrF P+deelv++yL++kv+++++ +     ++ +vd++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd+
  Bradi3g54817.1.p  10 LPPGFRFYPSDEELVCHYLRNKVANERFAAGGpagTMVDVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDR 102
                       79*************************666333337***************87788999********************************** PP

               NAM  91 evlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +             + vg++ktLvfy+grap+g+kt Wvmhe+r+
  Bradi3g54817.1.p 103 VIRNPrlaattsgarAASIVGMRKTLVFYRGRAPNGTKTCWVMHEFRI 150
                       **99877766655444444***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-587169IPR003441NAC domain
PROSITE profilePS5100556.210169IPR003441NAC domain
PfamPF023653.7E-2811150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLRN KVANERFAAG GPAGTMVDVD LHVHEPWELP  60
DVAKLSTNEW YFFSFRDRKY ATGLRTNRAT KSGYWKATGK DRVIRNPRLA ATTSGARAAS  120
IVGMRKTLVF YRGRAPNGTK TCWVMHEFRI ENPHTPPKED WVLCRVFHKK RADTEYAMDS  180
EQEMAGKGWN YVSSSSSCHG LEHQSPPAAF PSLSAGGGHH YQLPSSHDHH HHAGVDAFAS  240
MPPLLSYDSI LDFSQHLDGS GGTNVGAAAG SREDGGDQCG GLLMDLGLQE EQYNYNSLMQ  300
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4811704166NO APICAL MERISTEM PROTEIN
1ut4_B1e-4811704166NO APICAL MERISTEM PROTEIN
1ut7_A1e-4811704166NO APICAL MERISTEM PROTEIN
1ut7_B1e-4811704166NO APICAL MERISTEM PROTEIN
3swm_A1e-4811707169NAC domain-containing protein 19
3swm_B1e-4811707169NAC domain-containing protein 19
3swm_C1e-4811707169NAC domain-containing protein 19
3swm_D1e-4811707169NAC domain-containing protein 19
3swp_A1e-4811707169NAC domain-containing protein 19
3swp_B1e-4811707169NAC domain-containing protein 19
3swp_C1e-4811707169NAC domain-containing protein 19
3swp_D1e-4811707169NAC domain-containing protein 19
4dul_A1e-4811704166NAC domain-containing protein 19
4dul_B1e-4811704166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g54817.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640020.0AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572924.10.0NAC domain-containing protein 92
SwissprotQ5CD173e-58NAC77_ORYSJ; NAC domain-containing protein 77
SwissprotQ84TE68e-59NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLI1IDQ30.0I1IDQ3_BRADI; Uncharacterized protein
STRINGBRADI3G54817.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-79NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]