PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g56290.1.p
Common NameBRADI_3g56290, LOC100826037
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 171aa    MW: 19593.1 Da    PI: 8.4706
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g56290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.56.2e-1379137462
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        +r rr+ +NRe+ArrsR RK++++ eL   v  L + N++L ++l++    +++   +
  Bradi3g56290.1.p  79 ERRKRRMLSNRESARRSRMRKQKQLSELWAQVVHLRSTNRQLLDQLNHVIRDCDRILHD 137
                       6899******************************************9998888876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-1276154IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-1076133No hitNo description
PROSITE profilePS5021710.5378141IPR004827Basic-leucine zipper domain
PfamPF001703.1E-1078136IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-1280130No hitNo description
CDDcd147025.65E-1681132No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MYPAELASIP YLSSASAASF KPHYQVATND ILFQYNSLPV PQAISYQHVE HLVHEASLPV  60
GNKSNSDESD DYQHSLAEER RKRRMLSNRE SARRSRMRKQ KQLSELWAQV VHLRSTNRQL  120
LDQLNHVIRD CDRILHDNSK LRAEQAELKQ QLEKLPVENM ESSVMGPGMT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179100RRKRRMLSNRESARRSRMRKQK
29299RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g56290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570460.11e-123basic leucine zipper 43
TrEMBLI1IEA41e-122I1IEA4_BRADI; Uncharacterized protein
STRINGBRADI3G56290.11e-123(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-27basic leucine-zipper 42