PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g56340.1.p
Common NameBRADI_3g56340
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 409aa    MW: 44578.4 Da    PI: 8.7176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g56340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.2e-16159208255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR +iN++++ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Bradi3g56340.1.p 159 RSKHSATEQRRRTKINDRLDILRELLPNC----DQKRDKASFLLEVIEYIRLLQ 208
                       889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-18155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-14155212No hitNo description
Gene3DG3DSA:4.10.280.102.2E-20156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.123157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-10163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MELFQGEEPA HDFLSLRAGG GSSPFQHRLQ SAQQGYGLGP HSLVKPAEPV KQSSSHGGDG  60
AVSAAADLGE QVLPGGVGTF SIRQVPDARP REEAGMGRDA SVAAVHQGSR MEIAHEARSG  120
AMVRSAPPST MWQDSGIDKR SRAARSSGSS ADQEPSSPRS KHSATEQRRR TKINDRLDIL  180
RELLPNCDQK RDKASFLLEV IEYIRLLQEK CQKYESAIPE KDPTDSKSMA WDKVYCRSRW  240
RNTQNISQGQ GGGLSAATED MNNEQHCSPK GITVAPTSLF TTQSVKETST TASSSQNIIE  300
NNMPNNQLSW LSMSTMNQNS NASNSKLSKQ ETQSLRNDTQ SLSSAYSQGL LHKLKEALQK  360
SGVDPSQANI SVEINMDKRA RANAHIHDNS KANEGKEPMH ITKRLRCD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g56340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236005.20.0transcription factor BIM2 isoform X3
TrEMBLA0A0Q3FQ450.0A0A0Q3FQ45_BRADI; Uncharacterized protein
STRINGBRADI3G56340.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-37BES1-interacting Myc-like protein 2