PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g56380.1.p

Common Name

LOC100828498

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 273aa MW: 28120.1 Da PI: 7.9051

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g56380.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	41	101	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++ +kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+sss Bradi3g56380.1.p 41 QEVVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRSSS 101 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-27	33	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-33	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.497	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEDFQSIPGL AGRLFGGAAA AADIRRAQGA ASSRCGGGFS QEVVKCPRCE STNTKFCYYN 60 NYNLSQPRHF CKSCRRYWTK GGVLRNVPVG GGCRKSKRSS SSATPASPTD ANNANSKTQR 120 RASSSSRDSN SNSGSTSPTA TPSSNTTPIT FANPFAGDVP PPAPIFADQA AALASLFAPP 180 PPPPLPVFNF SPQPKTEGSA ISSVAVLLAA AEPEAPTSVS ESAAAAADMA PFMSLDSTGI 240 FELGDDASAA SYWNAGSCCW GTDVQDPSVY LP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g56380.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:11470159}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100892	3e-92	AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570468.1	0.0	dof zinc finger protein 4
Swissprot	Q6Z345	1e-84	DOF4_ORYSJ; Dof zinc finger protein 4
TrEMBL	A0A2K2D5C7	0.0	A0A2K2D5C7_BRADI; Uncharacterized protein
STRING	BRADI3G56380.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-30	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Bradi3g56380.1.p
Entrez Gene	100828498

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]