PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g56801.1.p
Common NameBRADI_3g56801, LOC104583860
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 224aa    MW: 23819.3 Da    PI: 4.3421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g56801.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-161766255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr++k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +++g
  Bradi3g56801.1.p 17 KYKGVRRRK-WGKWVSEIRLPNS---RERVWLGSYDAPEQAARAFDAAFVCIRG 66
                      8*****998.**********933...5*********************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-271678IPR001471AP2/ERF domain
PROSITE profilePS5103221.7991777IPR001471AP2/ERF domain
CDDcd000181.08E-211770No hitNo description
SuperFamilySSF541718.5E-181777IPR016177DNA-binding domain
SMARTSM003807.5E-281783IPR001471AP2/ERF domain
PfamPF008471.1E-91760IPR001471AP2/ERF domain
PRINTSPR003675.7E-91829IPR001471AP2/ERF domain
PRINTSPR003675.7E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSSTSAAEVV AEGGGRKYKG VRRRKWGKWV SEIRLPNSRE RVWLGSYDAP EQAARAFDAA  60
FVCIRGAHAA GADLNFPDFP PPVPPRHFAA PAVVDPQEVQ AAALSHANRA SAAALFMDSS  120
PAATETPPPA AAAMDEDDVP GGCQGVGPPE DGSMDWRPAM PPLFSPTGCW PGGGSNAYDF  180
LLQVPPPLFG DEDVMDQEEE ESGHGADASL WSFDPRSDSY FRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g56801.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236021.11e-160ethylene-responsive transcription factor ERF038
TrEMBLA0A0Q3I6Y11e-159A0A0Q3I6Y1_BRADI; Uncharacterized protein
STRINGTraes_6DL_FA861D610.24e-73(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-16ERF family protein