PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g57017.4.p
Common NameLOC100840222
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27575.5 Da    PI: 8.815
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g57017.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.6e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      ri+n++nrqvtfskRr g+lKKA+ELS+LCdaev +++fsstg+ly++++
  Bradi3g57017.4.p 10 RIDNSTNRQVTFSKRRSGLLKKAKELSILCDAEVGLVVFSSTGRLYDFCN 59
                      8***********************************************85 PP
2K-box77.14.6e-2676170498
             K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       ++ + +++++ + +q+e+a L+++++nLq+++++l+Ge+L+ L + +Lq Le++Le sl++i+++K++ll+ +ieel +k   +++en++L +
  Bradi3g57017.4.p  76 QQPVVNATSEIKLWQREAASLRQQLHNLQESHKQLMGEELSGLGVTDLQGLENRLEMSLRSIKTRKDHLLRGEIEELHRKGSLIHQENMELYR 168
                       44455788999********************************************************************************98 PP

             K-box  97 kl 98 
                       ++
  Bradi3g57017.4.p 169 RV 170
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-32290IPR002100Transcription factor, MADS-box
CDDcd002659.51E-43277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2584170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.77986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTNRQVT FSKRRSGLLK KAKELSILCD AEVGLVVFSS TGRLYDFCNT  60
NMKAVIDRYT RAKEEQQPVV NATSEIKLWQ REAASLRQQL HNLQESHKQL MGEELSGLGV  120
TDLQGLENRL EMSLRSIKTR KDHLLRGEIE ELHRKGSLIH QENMELYRRV NVMTQQKVEL  180
CRQLQSCEAR GAMDATKSCT TPYNFCIVQD ANTPADLELS RSQEKEGEHI KTGAPELGFQ  240
LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21182182MEF2C
5f28_B2e-21182182MEF2C
5f28_C2e-21182182MEF2C
5f28_D2e-21182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g57017.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693240.0KF469324.1 Brachypodium distachyon MADS-box transcription factor 29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755382.11e-180MADS-box transcription factor 57-like isoform X4
SwissprotQ6Z6W21e-132MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLI1IEJ21e-179I1IEJ2_BRADI; Uncharacterized protein
STRINGBRADI3G57017.31e-180(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-86AGAMOUS-like 16
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]
  4. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  5. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]