PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g57320.1.p

Common Name

BRADI_3g57320, LOC100846922

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YA

Protein Properties

Length: 257aa MW: 27968.2 Da PI: 10.5402

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g57320.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.3	1.1e-32	98	154	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VN+KQy++Il+RRq Rakle+++kl +k++kpylheSRh+hA++R+RgsgGrF Bradi3g57320.1.p 98 DEPIFVNPKQYHGILRRRQLRAKLEAQNKL-IKNKKPYLHESRHRHAMKRARGSGGRF 154 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.6E-37	96	157	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.796	97	157	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.8E-28	99	154	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-23	100	122	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-23	131	154	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MLLPASSSSL YASKGDSFGK TGDDDMGSTL NFNNKPPVFA SQNIDYGHPI TRISYPYSDS 60 NPGLWAAYGS RAMFHTQIAG GGTSTNTRVP LPLELAEDEP IFVNPKQYHG ILRRRQLRAK 120 LEAQNKLIKN KKPYLHESRH RHAMKRARGS GGRFLNSKEL QQQQQQQSCT VSTNATADGA 180 NSSGSTHLRL GSGSAGDRTT LSSKTVASQE NSKRVAAPAP AFTMTPMLRK DDAFFQQHGH 240 HLSFSGHFGQ ASGRYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-22	98	159	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	147	RHRHAMKRAR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g57320.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570525.1	0.0	nuclear transcription factor Y subunit A-4 isoform X1
TrEMBL	I1IEM5	0.0	I1IEM5_BRADI; Uncharacterized protein
STRING	BRADI3G57320.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13276	28	33
Representative plant	OGRP14632	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	4e-37	nuclear factor Y, subunit A5

Link Out ? help Back to Top
Phytozome	Bradi3g57320.1.p
Entrez Gene	100846922

Publications ? help Back to Top
Ma X, et al. Overexpression of wheat NF-YA10 gene regulates the salinity stress response in Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 86: p. 34-43 [PMID:25461698]