PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g57710.3.p
Common NameBRADI_3g57710, LOC100825421
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 414aa    MW: 43154.6 Da    PI: 6.0628
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g57710.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY985.9e-31184243159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r++ed +++++tYeg+Hnh+
  Bradi3g57710.3.p 184 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCQEDMSILITTYEGTHNHP 243
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-33169245IPR003657WRKY domain
SuperFamilySSF1182901.1E-27177245IPR003657WRKY domain
PROSITE profilePS5081129.126179245IPR003657WRKY domain
SMARTSM007744.5E-38184244IPR003657WRKY domain
PfamPF031061.6E-27185243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MQEEMEKMKE ENKMLRRVVD RTVRDYYELQ TKLAAYQKLP ADDAPKETDV FLSLGATAGL  60
GPEQQQAEAR RPSAGSDDTA ADDGCRPGQD NLGLSLSLGA SSSYEDQEKT GLEAAAPGMA  120
MSIDDVDDDG GGNKAGYALL ESSKMAPPDQ VAGGQQQQQG QGVNAANNRK ARVSVRVRCQ  180
GSTMNDGCQW RKYGQKVAKG NPCPRAYYRC TVAPGCPVRK QVQRCQEDMS ILITTYEGTH  240
NHPLPIGATA MAASSTASSN DTFMLLSSNN SSSSSVSGAG PPPSSYLSPF LLNSGSQYPG  300
AMAGGAQHLN LFGNPSSAQH LKYPAWPPSY PSSHAGAAGG KRPFWSAGAG DDRPTTAADN  360
AGTAAADSNR FSAAIAAAIK NYAGKDGGGQ VMGGKEGESS SSKWGVVESL PPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22171247176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g57710.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632471e-105AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573034.10.0probable WRKY transcription factor 9
TrEMBLA0A2K2D5K90.0A0A2K2D5K9_BRADI; Uncharacterized protein
TrEMBLI1IER70.0I1IER7_BRADI; Uncharacterized protein
STRINGBRADI3G57710.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-50WRKY DNA-binding protein 9