PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g57862.1.p
Common NameBRADI_3g57862, LOC100830738
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 233aa    MW: 24612.3 Da    PI: 5.0078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g57862.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-183079255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Bradi3g57862.1.p 30 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLRG 79
                      69****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9443089IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-183090IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-283089IPR001471AP2/ERF domain
SMARTSM003803.3E-323095IPR001471AP2/ERF domain
PfamPF008471.8E-113179IPR001471AP2/ERF domain
PRINTSPR003675.5E-93142IPR001471AP2/ERF domain
CDDcd000181.03E-153190No hitNo description
PRINTSPR003675.5E-95369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVKGAQHDAL GNGNASSAAA RQGRQHQQQQ YKGVRMRSWG SWVSEIRAPN QKTRIWLGSY  60
STAEAAARAY DAALLCLRGS AAAADLNFPV RLPFHLPAAA MSPKSIQRLA AAAASSNANA  120
ASFIPFLHDA GHGAMAASSA SMCSSPETAN NNGNDNDNAE HDDEMTMMMR GGDMDYGALA  180
DIDGFFPSPK CAGYGMMEMD PCSTFFAPAP AAAAECWEEE GEISLWSFSS FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1230891472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g57862.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770121e-97AK377012.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316187.11e-171ethylene-responsive transcription factor ERF019
TrEMBLA0A0Q3I7I01e-169A0A0Q3I7I0_BRADI; Uncharacterized protein
STRINGBRADI3G57867.21e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-24ERF family protein