PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g58360.1.p

Common Name

BRADI_3g58360, LOC100836879

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 296aa MW: 32114.4 Da PI: 10.1208

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g58360.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.2e-14	100	151	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ ++ Lr+++P++ ++++ + a+i+ A++++k+L+ Bradi3g58360.1.p 100 QRRNHIAVERNRRRQMNDYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 151 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.04E-12	98	155	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-14	98	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-17	98	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.523	99	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-11	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	105	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MALEAVVFPQ GQFSYCGTVT GKVAATASSL GTVDRIDQEE YLLEEKKSGV LLQQQEDHAG 60 EALSVPATPA AGRGRASPSA VRRRRRRPKP AKNKEEAESQ RRNHIAVERN RRRQMNDYLA 120 VLRSVMPPSY AQRGDQASIV AGAINFVKEL EQLLQSLESQ KRRRSGLPAP APPPFARFFT 180 FPQYSASGGN GNGSENGVAR RGVADVEVAV AESHASVKLL APRRRPNSKQ LLRMVLAMRC 240 LGLTVLHLNA TAAAADHLVF YSFSLKMEDE CRLSSADEVA AAVHQIVAED DGRTA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	RRRRRR
2	101	111	RNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g58360.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573068.1	0.0	transcription factor bHLH96
TrEMBL	I1IF03	0.0	I1IF03_BRADI; Uncharacterized protein
STRING	BRADI3G58360.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	5e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g58360.1.p
Entrez Gene	100836879