PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g59410.4.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 215aa MW: 24719.5 Da PI: 6.9053

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g59410.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.4	1.7e-24	97	144	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s++F pik+AA eL+v+lT LKr+CR++GI+RWPhRk++sl Bradi3g59410.4.p 97 LTFELVSQHFCVPIKQAAAELKVGLTQLKRRCRELGIPRWPHRKMRSL 144 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	78	165	IPR003035	RWP-RK domain
Pfam	PF02042	9.5E-22	97	144	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MYPLPQWSIE YLQEESPFFS TQHRLCTSTA TATQSYFCQD ELYALFQGDI LSLWAALEEE 60 APCKSEKELE LEQKLGPDAV EKTRMSNGPP EQEKPLLTFE LVSQHFCVPI KQAAAELKVG 120 LTQLKRRCRE LGIPRWPHRK MRSLQTLIDN VQELGRGTGE DGGMTKIVVE MLQQTKKLME 180 ERPGDVELDH TTKMLRQKCF KENYKRKRLM ALQG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g59410.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756209.2	1e-151	protein RKD1
Swissprot	Q9M9U9	7e-30	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2K2D5V1	1e-157	A0A2K2D5V1_BRADI; Uncharacterized protein
STRING	BRADI3G59410.1	1e-157	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-32	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bradi3g59410.4.p