PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g59420.2.p

Common Name

BRADI_3g59420

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 152aa MW: 17979.9 Da PI: 10.4695

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g59420.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.6	6.6e-25	21	69	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++le++s+yF +p+k+AA eL+v++T+LKr CR++ I RWPhRk+ksl Bradi3g59420.2.p 21 SLRLEQVSQYFCMPLKQAAEELKVGQTTLKRSCRELRILRWPHRKVKSL 69 799********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.426	1	90	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	22	69	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MEKATKNEEH LSDGSQREKP SLRLEQVSQY FCMPLKQAAE ELKVGQTTLK RSCRELRILR 60 WPHRKVKSLQ TLIENVQELE KDDVLGRSEK IRAVVQILQQ RQKLMEERPA GVVELDKETR 120 IFMQACYKEM YNRRRKGVKF AWMRSDRAGF R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g59420.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756080.1	1e-108	protein RKD1
TrEMBL	A0A2K2D5V5	1e-106	A0A2K2D5V5_BRADI; Uncharacterized protein
STRING	BRADI3G59420.1	1e-105	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-26	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bradi3g59420.2.p